The current version of Anubis was made as a quick "good enough" solution to an emergency. The article is very enthusiastic about explaining why it shouldn't work, but completely glosses over the fact that it has worked, at least to an extent where deploying it and maybe inconveniencing some users is preferable to having the entire web server choked out by a flood of indiscriminate scraper requests.
The purpose is to reduce the flood to a manageable level, not to block every single scraper request.